Showing : Combat SVA • reset
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SVA behaving weirdly, system is computationally singular , problem with method leek only
SVA combat sva leek
updated 3.5 years ago by • 0 • written 7.6 years ago by ▴ 10
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ComBat covariate bias when building centroid based predictors
combat combat sva pamr limma design matrix sva
6.2 years ago jmsendoya • 0
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985
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Help with multiple batch effects
combat sva batch effect
6.4 years ago Fp • 0
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748
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Number of SVA increased after ComBat
combat sva
6.6 years ago jonellevillar • 0
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1.3k
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Combat prior plots good enough?
combat combat sva
7.1 years ago Miss Agnieszka Aleksandra Golicz ▴ 40
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removing batch effects using sva combat and linear regression
combat sva microarry Jeff leek
7.4 years ago DataFanatic ▴ 10
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1.0k
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SVA: Reference manual improvment
combat sva sva
7.5 years ago alice.anlind • 0
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What is the input for Combat in R?
combat sva input files
7.7 years ago arisarkar88 ▴ 40
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RPKM counts with SVA package & Combat with SVA?
batch effect combat sva sva
7.7 years ago Ahdee ▴ 50
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1.1k
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Problem with Combat batch adjustment
combat sva
8.0 years ago vinnu260 ▴ 10
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1.8k
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is it possible to before and after batch effect removal from the data and see that batch effect removal actually worked
combat sva batch effect comba
updated 8.1 years ago by ▴ 120 • written 8.1 years ago by ▴ 10
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is it necessary to check batch effect in this case? and how to?
svaseq combat sva RANseq batcheffect removebatcheffect
updated 8.1 years ago by ▴ 50 • written 8.1 years ago by ▴ 10
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SVA) Error while using 'sva' package - combat
combat sva
8.2 years ago kkwon • 0
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1.8k
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Inspection of batch effect correction success with ComBat in R, regarding a merged dataset comprised of 4 different batches
affymetrix microarrays sva combat sva batch effect plotMDS
updated 8.2 years ago by ▴ 650 • written 8.3 years ago by ▴ 840
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2
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1.5k
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Batch effect problem using SVA showing problems
SVA combat sva batch effect
updated 8.3 years ago by ▴ 650 • written 8.3 years ago by ▴ 10
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4
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2.1k
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ComBat: Adjustment for 3experimental variables
ENmix combat.mc illumina450k combat sva
8.4 years ago DSP • 0
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SVA: Using ComBat for synthetic genetic array data
combat sva sga combat batch effect
8.6 years ago John Townsend ▴ 20
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3
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SVA: Including variable of interest in ComBat model matrix
combat sva SVA sva ComBat batch effect
updated 8.6 years ago by ▴ 870 • written 8.6 years ago by ▴ 20
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cross platform normalization in R
R Combat SVA
updated 8.9 years ago by ★ 13k • written 8.9 years ago by • 0
19 results • Page 1 of 1
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Comment: Merge Replicates vs Mixed Model by gabriel.hoffman ▴ 160
It is almost always better to retain the full observed data, if the statistical software is able to model the repeated measures. This is a…
Comment: makeContrastsDream for Interaction by gabriel.hoffman ▴ 160
The simplest way to handle contrasts with an interaction term is to create a new variable. Lets consider a simpler case with variables `Se…
Answer: DESeq2 sizefactors counfounded with biological treatment by James W. MacDonald 67k
Your question is off-topic for this site, which is primarily intended to help people with technical issues with Bioconductor packages rathe…
Comment: Epic v2 Annotation CpG_maf source? by Meghan • 0
Thank you, so much, for this reply!
Comment: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome by remi-xavier.coux ▴ 10
That indeed worked, thanks a lot for the help (and for karyoploteR)
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Answer: biomaRt has encountered an unknown server error while using getLDS
Comment: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome
Answer: Epic v2 Annotation CpG_maf source?
Answer: bioconductor packages on bioconda
Filtering low variance genes for WGCNA
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